RYTM / Rhythm Pharmaceuticals, Inc. - Pengajuan SECLaporan Tahunan, Pernyataan Proksi

Rhythm Pharmaceuticals, Inc.
US ˙ NasdaqGM ˙ US76243J1051

Mga Batayang Estadistika
LEI 529900JPNWXQ8DPLA551
CIK 1649904
SEC Filings
All companies that sell securities in the United States must register with the Securities and Exchange Commission (SEC) and file reports on a regular basis. These reports include company annual reports (10K, 10Q), news updates (8K), investor presentations (found in 8Ks), insider trades (form 4), ownership reports (13D, and 13G), and reports related to the specific securities sold, such as registration statements and prospectus. This page shows recent SEC filings related to Rhythm Pharmaceuticals, Inc.
SEC Filings (Chronological Order)
Halaman ini menyediakan daftar lengkap dan kronologis dari Pengajuan SEC, tidak termasuk pengajuan kepemilikan yang kami sediakan di tempat lain.
August 5, 2025 EX-10.1

Non-Employee Director Compensation Program

EXHIBIT 10.1 Rhythm Pharmaceuticals, Inc. Non-Employee Director Compensation Program Non-employee members of the board of directors (the “Board”) of Rhythm Pharmaceuticals, Inc. (the “Company”) shall receive cash and equity compensation as set forth in this Non-Employee Director Compensation Program (this “Program”). The cash and equity compensation described in this Program shall be paid or be ma

August 5, 2025 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 5, 2025 RHYTHM PHARMACEUTI

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 5, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

August 5, 2025 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended June 30, 2025 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHYT

August 5, 2025 EX-99.1

Rhythm Pharmaceuticals Reports Second Quarter 2025 Financial Results and Business Update -- Second quarter 2025 net product revenue from global sales of IMCIVREE® (setmelanotide) of $48.5 million -- -- U.S. and EU regulatory submissions for setmelano

Exhibit 99.1 Rhythm Pharmaceuticals Reports Second Quarter 2025 Financial Results and Business Update - Second quarter 2025 net product revenue from global sales of IMCIVREE® (setmelanotide) of $48.5 million - - U.S. and EU regulatory submissions for setmelanotide in acquired hypothalamic obesity on track to be completed in the third quarter of 2025 - - Bivamelagon Phase 2 trial met primary endpoi

July 11, 2025 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 9, 2025 RHYTHM PHARMACEUTICA

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 9, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissi

July 11, 2025 EX-1.1

Underwriting Agreement, dated July 9, 2025, between Rhythm Pharmaceuticals, Inc. and Morgan Stanley & Co. LLC and BofA Securities, Inc., as representatives of the several underwriters named therein.

Exhibit 1.1 2,058,824 Shares of Common Stock Rhythm Pharmaceuticals, Inc. Common Stock ($0.001 par value per share) UNDERWRITING AGREEMENT July 9, 2025 July 9, 2025 Morgan Stanley & Co. LLC BofA Securities, Inc. c/o Morgan Stanley & Co. LLC 1585 Broadway New York, New York 10036 c/o BofA Securities, Inc. One Bryant Park New York, New York 10036 Ladies and Gentlemen: Rhythm Pharmaceuticals, Inc., a

July 10, 2025 EX-FILING FEES

Table 1: Newly Registered and Carry Forward Securities

Calculation of Filing Fee Tables S-3 RHYTHM PHARMACEUTICALS, INC. Table 1: Newly Registered and Carry Forward Securities Security Type Security Class Title Fee Calculation or Carry Forward Rule Amount Registered Proposed Maximum Offering Price Per Unit Maximum Aggregate Offering Price Fee Rate Amount of Registration Fee Carry Forward Form Type Carry Forward File Number Carry Forward Initial Effect

July 10, 2025 424B5

2,058,824 Shares Common Stock

TABLE OF CONTENTS  Filed Pursuant to Rule 424(b)(5)  Registration No. 333-270233 PROSPECTUS SUPPLEMENT (To Prospectus dated March 2, 2023) 2,058,824 Shares Common Stock We are offering 2,058,824 shares of our common stock. Our common stock is listed on the Nasdaq Global Market under the symbol “RYTM.” On July 9, 2025, the last reported sale price for our common stock on the Nasdaq Global Market wa

July 9, 2025 EX-99.2

© 2025. Rhythm Pharmaceuticals, Inc. All rights reserved. Rhythm and its logo are trademarks of Rhythm Pharmaceuticals, Inc. ® July 9, 2025 Rhythm Pharmaceuticals Positive Topline Results from Phase 2 Trial Evaluating Oral MC4R Agonist Bivamelagon in

Exhibit 99.2 © 2025. Rhythm Pharmaceuticals, Inc. All rights reserved. Rhythm and its logo are trademarks of Rhythm Pharmaceuticals, Inc. ® July 9, 2025 Rhythm Pharmaceuticals Positive Topline Results from Phase 2 Trial Evaluating Oral MC4R Agonist Bivamelagon in Patients with Acquired Hypothalamic Obesity 2 ® This presentation and the accompanying oral presentation contain forward - looking state

July 9, 2025 424B5

Subject to Completion, dated July 9, 2025

TABLE OF CONTENTS The information in this preliminary prospectus supplement and the accompanying prospectus, relating to an effective registration statement under the Securities Act of 1933, as amended, is not complete and may be changed.

July 9, 2025 EX-99.1

Rhythm Pharmaceuticals Announces Oral MC4R Agonist Bivamelagon Achieved Statistically Significant, Clinically Meaningful BMI Reductions in Placebo-controlled Phase 2 Trial in Acquired Hypothalamic Obesity -- Bivamelagon achieved BMI reductions in pat

Exhibit 99.1 Rhythm Pharmaceuticals Announces Oral MC4R Agonist Bivamelagon Achieved Statistically Significant, Clinically Meaningful BMI Reductions in Placebo-controlled Phase 2 Trial in Acquired Hypothalamic Obesity - Bivamelagon achieved BMI reductions in patients with acquired hypothalamic obesity of -9.3% and -7.7% in 600mg and 400mg cohorts, respectively, at 14 weeks - - Post-hoc analysis sh

July 9, 2025 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 9, 2025 RHYTHM PHARMACEUTICA

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 9, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissi

June 26, 2025 EX-3.1

Amended and Restated Certificate of Incorporation of Rhythm Pharmaceuticals, Inc. dated October 10, 2017, and the Certificate of Amendment to the Amended and Restated Certificate of Incorporation of Rhythm Pharmaceuticals, Inc. dated June 25, 2025.

Exhibit 3.1 AMENDED AND RESTATED CERTIFICATE OF INCORPORATION OF RHYTHM PHARMACEUTICALS, INC. Rhythm Pharmaceuticals, Inc., a corporation organized and existing under the laws of the State of Delaware (the “Corporation”), DOES HEREBY CERTIFY: FIRST:The name of the Corporation is “Rhythm Pharmaceuticals, Inc.” The date of filing the original Certificate of Incorporation of the Corporation with the

June 26, 2025 8-K

Amendments to Articles of Incorporation or Bylaws; Change in Fiscal Year, Financial Statements and Exhibits, Submission of Matters to a Vote of Security Holders

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): June 24, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

May 7, 2025 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 7, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissio

May 7, 2025 EX-99.1

Rhythm Pharmaceuticals Reports First Quarter 2025 Financial Results and Business Update -- First quarter 2025 net product revenue from global sales of IMCIVREE® (setmelanotide) of $37.7 million -- -- Setmelanotide pivotal Phase 3 TRANSCEND trial met

EXHIBIT 99.1 Rhythm Pharmaceuticals Reports First Quarter 2025 Financial Results and Business Update - First quarter 2025 net product revenue from global sales of IMCIVREE® (setmelanotide) of $37.7 million - - Setmelanotide pivotal Phase 3 TRANSCEND trial met primary endpoint with -19.8% placebo-adjusted BMI reduction in patients (N=120) with acquired hypothalamic obesity - - U.S. and EU regulator

May 7, 2025 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended March 31, 2025 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHY

April 29, 2025 DEF 14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.)

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☐ Preliminary Proxy Statement ☐ Confidential, for Use of the Commission Only (as permitted by Rule 14a

April 29, 2025 DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.)

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☐ Preliminary Proxy Statement ☐ Confidential, for Use of the Commission Only (as permitted by Rule 14a-6(e)(2)) ☐ Defini

April 18, 2025 PRE 14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.)

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☒ Preliminary Proxy Statement ☐ Confidential, for Use of the Commission Only (as permitted by Rule 14a

April 7, 2025 EX-99.2

3 ® David Meeker, MD Chair, President and Chief Executive Officer Hunter C. Smith Chief Financial Officer On Today’s Call Susan Phillips, MD Pediatric Endocrinologist at Rady Children's Hospital-San Diego Professor of Pediatrics at UC San Diego Schoo

Exhibit 99.2 © 2025. Rhythm Pharmaceuticals, Inc. All rights reserved. Rhythm and its logo are trademarks of Rhythm Pharmaceuticals, Inc. ® April 7, 2025 Rhythm Pharmaceuticals Positive Topline Results from Phase 3 Trial Evaluating Setmelanotide in Patients with Acquired Hypothalamic Obesity 2 ® This presentation and the accompanying oral presentation contain forward-looking statements within the

April 7, 2025 EX-99.1

Rhythm Pharmaceuticals Announces Pivotal Phase 3 TRANSCEND Trial Meets Primary Endpoint with -19.8% Placebo-adjusted BMI Reduction in Patients (N=120) with Acquired Hypothalamic Obesity -- Patients with acquired hypothalamic obesity on setmelanotide

EX-99.1 2 rytm-20250407xex99d1.htm EX-99.1 Exhibit 99.1 Rhythm Pharmaceuticals Announces Pivotal Phase 3 TRANSCEND Trial Meets Primary Endpoint with -19.8% Placebo-adjusted BMI Reduction in Patients (N=120) with Acquired Hypothalamic Obesity - Patients with acquired hypothalamic obesity on setmelanotide therapy (n=81) achieved mean BMI change of -16.5% compared with +3.3% for placebo (n=39) at 52

April 7, 2025 8-K

Regulation FD Disclosure, Financial Statements and Exhibits, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): April 7, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

March 20, 2025 8-K

Regulation FD Disclosure, Entry into a Material Definitive Agreement, Termination of a Material Definitive Agreement, Financial Statements and Exhibits

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 14, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

March 20, 2025 EX-99.1

Rhythm Pharmaceuticals Reacquires Licensing Rights to IMCIVREE® (setmelanotide) in China with Termination of Agreement with RareStone Ltd.

Exhibit 99.1 Rhythm Pharmaceuticals Reacquires Licensing Rights to IMCIVREE® (setmelanotide) in China with Termination of Agreement with RareStone Ltd. BOSTON, March 20, 2025 - Rhythm Pharmaceuticals, Inc. (Nasdaq: RYTM), a global commercial-stage biopharmaceutical company focused on transforming the lives of patients living with rare neuroendocrine diseases, today announced that it reacquired the

February 28, 2025 10-K

‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-K

Table of Contents ‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

February 28, 2025 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): February 27, 2025 RHYTHM PHARMACE

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): February 27, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Com

February 28, 2025 EX-19

Rhythm Global Insider Trading Policy

Exhibit 19 Global Insider Trading Policy Effective: 01 Jan 2025 Page: 1 of 8 1 PURPOSE The purpose of this Global Insider Trading Policy (this “Policy”) is to reduce the risk that any employee, executive officer or member of the Board of Directors of Rhythm Pharmaceuticals, Inc.

February 28, 2025 S-8

As filed with the Securities and Exchange Commission on February 28, 2025

As filed with the Securities and Exchange Commission on February 28, 2025 Registration No.

February 28, 2025 EX-21.1

List of Subsidiaries.

Exhibit 21.1 Subsidiaries of Rhythm Pharmaceuticals, Inc. Entity Jurisdiction of Organization or Incorporation Rhythm Pharmaceuticals Limited Ireland Rhythm Securities Corp. Massachusetts Rhythm Pharmaceuticals Netherlands, B.V. The Netherlands Rhythm Pharmaceuticals UK Limited Rhythm Pharmaceuticals France SAS Rhythm Pharmaceuticals Italy S.r.L. Rhythm Pharmaceuticals Canada Inc. United Kingdom F

February 28, 2025 EX-FILING FEES

Filing Fee Table

Calculation of Filing Fee Tables S-8 RHYTHM PHARMACEUTICALS, INC. Table 1: Newly Registered Securities Security Type Security Class Title Fee Calculation Rule Amount Registered Proposed Maximum Offering Price Per Unit Maximum Aggregate Offering Price Fee Rate Amount of Registration Fee 1 Equity Common Stock, par value $0.001 per share 457(a) 2,495,626 $ 52.44 $ 130,870,627.44 0.0001531 $ 20,036.29

February 26, 2025 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): February 26, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Com

February 26, 2025 EX-99.1

Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2024 Financial Results and Business Update -- Fourth quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $41.8 million -- -- On track to report topline data from globa

Exhibit 99.1 Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2024 Financial Results and Business Update - Fourth quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $41.8 million - - On track to report topline data from global Phase 3 trial evaluating setmelanotide in acquired hypothalamic obesity in the second quarter of 2025 - - Completed enrollment in the Phas

January 10, 2025 8-K

Regulation FD Disclosure, Financial Statements and Exhibits, Results of Operations and Financial Condition, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): January 10, 2025 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

January 10, 2025 EX-99.2

® 2 This presentation contains certain forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995, and that involve risks and uncertainties, including without limitation statements regarding the potential, s

Exhibit 99.2 © Rhythm® Pharmaceuticals, Inc. All rights reserved. ® January 2025 Rhythm Pharmaceuticals ® 2 This presentation contains certain forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995, and that involve risks and uncertainties, including without limitation statements regarding the potential, safety, efficacy, and regulatory and clinical p

January 10, 2025 EX-99.1

Rhythm Pharmaceuticals Announces Preliminary Fourth Quarter and Full Year 2024 Net Product Revenues, Pipeline Advancements and Upcoming Milestones -- Preliminary unaudited net revenues from global sales of IMCIVREE® (setmelanotide) of approximately $

Exhibit 99.1 Rhythm Pharmaceuticals Announces Preliminary Fourth Quarter and Full Year 2024 Net Product Revenues, Pipeline Advancements and Upcoming Milestones - Preliminary unaudited net revenues from global sales of IMCIVREE® (setmelanotide) of approximately $42 million for the fourth quarter of 2024 and approximately $130 million for the full year of 2024 - - On track to report topline data fro

November 14, 2024 SC 13G/A

RYTM / Rhythm Pharmaceuticals, Inc. / RA CAPITAL MANAGEMENT, L.P. - SC 13G/A Passive Investment

SC 13G/A 1 tm2427451d16sc13ga.htm SC 13G/A UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G/A Under the Securities Exchange Act of 1934 (Amendment No. 6)* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock, $0.001 par value per share (Title of Class of Securities) 76243J105 (CUSIP Number) September 30, 2024 (Date of Event Which Requires Filing of this St

November 14, 2024 EX-99.1

AGREEMENT

EX-99.1 2 d113430dex991.htm EX-99.1 EXHIBIT 1 AGREEMENT The persons below hereby agree that the Schedule 13G to which this agreement is attached as an exhibit, as well as all future amendments to such Schedule 13G, shall be filed on behalf of each of them. This agreement is intended to satisfy the requirements of Rule 13d-1(k)(1)(iii) under the Securities Exchange Act of 1934. Date: November 14, 2

November 14, 2024 SC 13G

RYTM / Rhythm Pharmaceuticals, Inc. / PERCEPTIVE ADVISORS LLC - SC 13G Passive Investment

SC 13G 1 d113430dsc13g.htm SC 13G UNITED STATES SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No.  )* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, $0.001 par value per share (Title of Class of Securities) 76243J105 (CUSIP Number) September 30, 2024 (Date of Event Which Requires Filing of this Statement) Ch

November 14, 2024 EX-99.1

Exhibit 1: Joint Filing Agreement

EX-99.1 2 tm2427451d16ex1.htm EXHIBIT 1 EXHIBIT 1 AGREEMENT This Joint Filing Agreement, dated as of November 14, 2024, is by and among RA Capital Management, L.P., Peter Kolchinsky, Rajeev Shah, and RA Capital Healthcare Fund, L.P. (the foregoing are collectively referred to herein as the “Filers”). Each of the Filers may be required to file with the United States Securities and Exchange Commissi

November 12, 2024 SC 13G/A

RYTM / Rhythm Pharmaceuticals, Inc. / PRIMECAP MANAGEMENT CO/CA/ - PRIMECAP MANAGEMENT CO/CA/ Passive Investment

SC 13G/A 1 rytma7111124.htm PRIMECAP MANAGEMENT CO/CA/ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 7)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) COM (Title of Class of Securities) 76243J105 (CUSIP Number) September 30, 2024 (Date of Event which Requires Filing of this Statement) Check the appropri

November 6, 2024 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended September 30, 2024 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223

November 5, 2024 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): November 5, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 5, 2024 EX-99.1

Rhythm Pharmaceuticals Reports Third Quarter 2024 Financial Results and Business Update -- Third quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $33.3 million -- -- Adult patients with acquired hypothalamic obesity (N=8) ac

Exhibit 99.1 Rhythm Pharmaceuticals Reports Third Quarter 2024 Financial Results and Business Update - Third quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $33.3 million - - Adult patients with acquired hypothalamic obesity (N=8) achieved mean BMI reduction of 12.8% on setmelanotide therapy at three months in French early-access program - - Top-line data readout for Pha

September 19, 2024 8-K

Submission of Matters to a Vote of Security Holders

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): September 18, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Co

August 14, 2024 10-Q/A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q/A Amendment No. 1

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q/A Amendment No. 1 ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended June 30, 2024 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHYT

August 7, 2024 DEFR14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.1)

TABLE OF CONTENTS UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.1) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☐ Preliminary Proxy Statement ☐ Confidential, for Use of the Commission Only (as permitted by Rule 14

August 7, 2024 DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amend

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.

August 6, 2024 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended June 30, 2024 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHYT

August 6, 2024 EX-99.1

Rhythm Pharmaceuticals Reports Second Quarter 2024 Financial Results and Business Update -- Second quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $29.1 million -- -- Dosed first patients in supplemental, 12-patient Japanes

Exhibit 99.1 Rhythm Pharmaceuticals Reports Second Quarter 2024 Financial Results and Business Update - Second quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $29.1 million - - Dosed first patients in supplemental, 12-patient Japanese cohort in global Phase 3 trial evaluating setmelanotide in hypothalamic obesity; On track for topline data from 120-patient, pivotal cohor

August 6, 2024 EX-10.1

Non-Employee Director Compensation Program

Exhibit 10.1 Rhythm Pharmaceuticals, Inc. Non-Employee Director Compensation Program Non-employee members of the board of directors (the “Board”) of Rhythm Pharmaceuticals, Inc. (the “Company”) shall receive cash and equity compensation as set forth in this Non-Employee Director Compensation Program (this “Program”). The cash and equity compensation described in this Program shall be paid or be ma

August 6, 2024 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 6, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

July 10, 2024 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 10, 2024 RHYTHM PHARMACEUTIC

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 10, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

July 10, 2024 424B7

3,124,995 Shares of Common Stock

TABLE OF CONTENTS  Filed Pursuant to Rule 424(b)(7)  Registration No. 333-270233 PROSPECTUS SUPPLEMENT (To Prospectus dated March 2, 2023) 3,124,995 Shares of Common Stock This prospectus supplement relates to the resale or other disposition of up to an aggregate of 3,124,995 shares of our common stock, $0.001 par value per share, that will become issuable upon conversion of the 150,000 shares of

July 10, 2024 EX-FILING FEES

Calculation of Filing Fee Tables (Form Type) Rhythm Pharmaceuticals, Inc. (Exact Name of Registrant as Specified in its Charter) Table 1: Newly Registered and Carry Forward Securities

Exhibit 107 Calculation of Filing Fee Tables 424(b)(7) (Form Type) Rhythm Pharmaceuticals, Inc.

June 17, 2024 DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amend

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.

June 17, 2024 8-K

Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): June 17, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

May 7, 2024 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended March 31, 2024 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHY

May 7, 2024 EX-10.1

Summary of Non-Employee Director Compensation Policy.

Exhibit 10.1 Summary of Non-Employee Director Compensation Policy Under the Company’s non-employee director compensation policy, all non-employee directors will be paid an annual retainer fee of $50,000 and such additional fees as are set forth in the following table. All payments will be made quarterly in arrears. Non-Employee Director Annual Fee Lead Director $ 35,000 Non-Executive Chair $ 30,00

May 7, 2024 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 7, 2024 RHYTHM PHARMACEUTICAL

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 7, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissio

May 7, 2024 EX-99.1

Rhythm Pharmaceuticals Rhythm Pharmaceuticals Reports First Quarter 2024 Financial Results and Business Update -- First quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $26.0 million -- -- On track to submit sNDA to the FDA

Exhibit 99.1 Rhythm Pharmaceuticals Rhythm Pharmaceuticals Reports First Quarter 2024 Financial Results and Business Update - First quarter 2024 net revenue from global sales of IMCIVREE® (setmelanotide) of $26.0 million - - On track to submit sNDA to the FDA to treat pediatric patients between 2 and younger than 6 years old in approved indications in second quarter of 2024 - - Phase 3 trial evalu

May 7, 2024 EX-10.4

Rhythm Pharmaceuticals, Inc. 2017 Equity Incentive Plan Performance Unit Agreement

Exhibit 10.4 RHYTHM PHARMACEUTICALS, INC. 2017 EQUITY INCENTIVE PLAN Performance Unit Agreement This Performance Unit Agreement (this “Agreement”), dated as of [ ● ] (the “Date of Grant”), is between Rhythm Pharmaceuticals, Inc., a corporation organized under the laws of the State of Delaware (the “Company”) and [ ● ] (the “Participant”). Capitalized terms used in this Agreement without definition

May 7, 2024 EX-10.5

Third Amendment to Lease, dated May 2, 2024, by and between the Registrant and 500 Boylston & 222 Berkeley Owner (DE) LLC.

Exhibit 10.5 TWO TWENTY-TWO BERKELEY STREET Boston, MA Third Amendment to Lease Rhythm Pharmaceuticals, Inc. THIS THIRD AMENDMENT TO LEASE (this “Third Amendment”) is made as of , 2024 (the “Effective Date”) by and between 500 BOYLSTON & 222 BERKELEY OWNER (DE) LLC, a Delaware limited liability company (“Landlord”), and RHYTHM PHARMACEUTICALS, INC., a Delaware corporation (“Tenant”). Background A.

May 7, 2024 EX-3.4

Amended and Restated Certificate of Designations

Exhibit 3.4 Rhythm Pharmaceuticals, Inc. Amended and Restated Certificate of Designations Series A Convertible Preferred Stock May 7, 2024 Table of Contents Page Section 1. Definitions 1 Section 2. Rules of Construction 14 Section 3. The Convertible Preferred Stock 14 (a) Designation; Par Value 14 (b) Number of Authorized Shares 14 (c) Form, Dating and Denominations 15 (d) Method of Payment; Delay

April 30, 2024 SC 13D/A

RYTM / Rhythm Pharmaceuticals, Inc. / NEW ENTERPRISE ASSOCIATES 13 LP - NEW ENTERPRISE ASSOCIATES 13, LP (RHYTHM PHARMACEUTICALS) - SCHEDULE 13D/A(#2E) Activist Investment

Schedule 13D UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13D Under the Securities Exchange Act of 1934 (Amendment No. 2)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, $.001 par value (Title of Class of Securities) 76243J105 (CUSIP Number) Stephanie Brecher New Enterprise Associates 1954 Greenspring Drive, Suite 600, Timonium, MD 21093 (410) 842-4

April 26, 2024 DEF 14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.      )

TABLE OF CONTENTS UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.      ) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☐ Preliminary Proxy Statement ☐ Confidential, for Use of the Commission Only (as permitted by Ru

April 26, 2024 DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amend

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.

April 17, 2024 SC 13D/A

RYTM / Rhythm Pharmaceuticals, Inc. / PERCEPTIVE ADVISORS LLC - SC 13D/A Activist Investment

SC 13D/A 1 d803502dsc13da.htm SC 13D/A SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13D/A Under the Securities Exchange Act of 1934 (Amendment No. 2)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class of Securities) 76243J105 (CUSIP Number) Alexander Rakitin Perceptive Advisors LLC 51 Astor Place, 10th Floor New York, NY 10

April 17, 2024 EX-99.5

JOINT FILING AGREEMENT

EX-99.5 Exhibit 5 JOINT FILING AGREEMENT The persons below hereby agree that the Schedule 13D to which this agreement is attached as an exhibit, as well as all future amendments to such Schedule 13D, shall be filed jointly on behalf of each of them. This agreement is intended to satisfy the requirements of Rule 13d-1(k)(1)(iii) under the Securities Exchange Act of 1934. Dated: April 17, 2024 PERCE

April 16, 2024 8-K

Amendments to Articles of Incorporation or Bylaws; Change in Fiscal Year, Entry into a Material Definitive Agreement, Material Modification to Rights of Security Holders, Financial Statements and Exhibits, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): April 15, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

April 16, 2024 EX-3.1

Certificate of Designations

Exhibit 3.1 Rhythm Pharmaceuticals, Inc. Certificate of Designations Series A Convertible Preferred Stock April 15, 2024 Table of Contents Page    Section 1. Definitions 1 Section 2. Rules of Construction 13 Section 3. The Convertible Preferred Stock 14 (a) Designation; Par Value 14 (b) Number of Authorized Shares 14 (c) Form, Dating and Denominations 14 (d) Method of Payment; Delay When Payment D

April 3, 2024 SC 13D/A

RYTM / Rhythm Pharmaceuticals, Inc. / PERCEPTIVE ADVISORS LLC - SC 13D/A Activist Investment

SC 13D/A 1 d815846dsc13da.htm SC 13D/A SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13D/A Under the Securities Exchange Act of 1934 (Amendment No. 1)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class of Securities) 76243J105 (CUSIP Number) Alexander Rakitin Perceptive Advisors LLC 51 Astor Place, 10th Floor New York, NY 10

April 1, 2024 8-K

Entry into a Material Definitive Agreement, Unregistered Sales of Equity Securities, Financial Statements and Exhibits, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): April 1, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

April 1, 2024 EX-10.1

Investment Agreement dated April 1, 2024, by and between Rhythm Pharmaceuticals, Inc., certain affiliates of Perceptive Advisors LLC, and certain other investors

Exhibit 10.1 INVESTMENT AGREEMENT dated as of April 1, 2024 by and among Rhythm Pharmaceuticals, Inc. and the Purchasers party hereto. TABLE OF CONTENTS Page Article I PURCHASE; CLOSING 1 1.1 Purchase; Use of Proceeds 1 1.2 Closing 1 1.3 Closing Conditions 2 Article II  REPRESENTATIONS AND WARRANTIES 5 2.1 Representations and Warranties of the Company 5 2.2 Representations and Warranties of the Pu

April 1, 2024 EX-99.1

Rhythm Pharmaceuticals Secures $150 Million in Convertible Preferred Stock Financing -- Proceeds from financing and existing cash on-hand sufficient to fund planned operations into 2026 --

Exhibit 99.1 Rhythm Pharmaceuticals Secures $150 Million in Convertible Preferred Stock Financing - Proceeds from financing and existing cash on-hand sufficient to fund planned operations into 2026 - BOSTON, April 1, 2024 – Rhythm Pharmaceuticals, Inc. (Nasdaq: RYTM), a commercial-stage biopharmaceutical company focused on transforming the lives of patients and their families living with rare neur

March 20, 2024 SC 13D

RYTM / Rhythm Pharmaceuticals, Inc. / PERCEPTIVE ADVISORS LLC - SC 13D Activist Investment

SC 13D 1 d813811dsc13d.htm SC 13D SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13D Under the Securities Exchange Act of 1934 (Amendment )* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class of Securities) 76243J105 (CUSIP Number) Alexander Rakitin Perceptive Advisors LLC 51 Astor Place, 10th Floor New York, NY 10003 (646) 20

March 20, 2024 EX-99.1

JOINT FILING AGREEMENT

EX-99.1 2 d813811dex991.htm EX-99.1 Exhibit 1 JOINT FILING AGREEMENT The persons below hereby agree that the Schedule 13D to which this agreement is attached as an exhibit, as well as all future amendments to such Schedule 13D, shall be filed jointly on behalf of each of them. This agreement is intended to satisfy the requirements of Rule 13d-1(k)(1)(iii) under the Securities Exchange Act of 1934.

February 29, 2024 8-K

Entry into a Material Definitive Agreement, Financial Statements and Exhibits

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): February 29, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Com

February 29, 2024 EX-21.1

List of Subsidiaries.

Exhibit 21.1 Subsidiaries of Rhythm Pharmaceuticals, Inc. Entity Jurisdiction of Organization or Incorporation Rhythm Pharmaceuticals Limited Ireland Rhythm Securities Corp. Massachusetts Rhythm Pharmaceuticals Netherlands, B.V. The Netherlands Rhythm Pharmaceuticals UK Limited Rhythm Pharmaceuticals France SAS Rhythm Pharmaceuticals Italy S.r.L. Rhythm Pharmaceuticals Canada Inc. United Kingdom F

February 29, 2024 S-8

As filed with the Securities and Exchange Commission on February 29, 2024

As filed with the Securities and Exchange Commission on February 29, 2024 Registration No.

February 29, 2024 10-K

‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-K

Table of Contents ‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

February 29, 2024 EX-97.1

Policy for Recovery of Erroneously Awarded Compensation

Exhibit 97 RHYTHM PHARMACEUTICALS, INC. POLICY FOR RECOVERY OF ERRONEOUSLY AWARDED COMPENSATION Rhythm Pharmaceuticals, Inc. (the “Company”) has adopted this Policy for Recovery of Erroneously Awarded Compensation (the “Policy”), effective as of October 2, 2023 (the “Effective Date”). Capitalized terms used in this Policy but not otherwise defined herein are defined in Section 11. 1. Persons Subje

February 29, 2024 424B5

Up to $200,000,000 Common Stock

TABLE OF CONTENTS  Filed Pursuant to Rule 424(b)(5)  Registration No. 333-270233 PROSPECTUS SUPPLEMENT (To Prospectus dated March 2, 2023) Up to $200,000,000 Common Stock We previously entered into a Sales Agreement, dated November 2, 2021, or the Sales Agreement, with Cowen and Company LLC, or TD Cowen, relating to the offer and sale of shares of our common stock, $0.001 par value per share, from

February 29, 2024 EX-FILING FEES

Filing Fee Table

Exhibit 107.1 CALCULATION OF FILING FEE TABLE FORM S-8 (Form Type) RHYTHM PHARMACEUTICALS, INC. (Exact Name of Registrant as Specified in its Charter) Table I: Newly Registered Securities Plan Security Type Security Class Title Fee Calculation Rule Amount Registered(1) Proposed Maximum Offering Price Per Unit Maximum Aggregate Offering Price Fee Rate Amount of Registration Fee 2017 Incentive Award

February 29, 2024 EX-10.25

Exclusive License Agreement, dated January 4, 2024, by and between Rhythm Pharmaceuticals, Inc. and LG Chem, Ltd.

Exhibit 10.25 [***] Certain information in this document has been excluded pursuant to Regulation S-K, Item (601)(b)(10). Such excluded information is both (i) not material and (ii) the type that the Registrant treats as private or confidential. Execution Version EXCLUSIVE LICENSE AGREEMENT This EXCLUSIVE LICENSE AGREEMENT (this “Agreement”) is entered into as of January 4, 2024 (the “Effective Da

February 29, 2024 EX-FILING FEES

Calculation of Filing Fee Tables (Form Type) Rhythm Pharmaceuticals, Inc. (Exact Name of Registrant as Specified in its Charter) Table 1: Newly Registered Securities

Exhibit 107 Calculation of Filing Fee Tables 424(b)(5) (Form Type) Rhythm Pharmaceuticals, Inc.

February 29, 2024 EX-10.6

Summary of Non-Employee Director Compensation Policy

Exhibit 10.6 Summary of Non-Employee Director Compensation Policy Under the Company’s non-employee director compensation policy, all non-employee directors will be paid an annual retainer fee of $50,000 and such additional fees as are set forth in the following table. All payments will be made quarterly in arrears. Non-Employee Director Annual Fee Lead Director $ 35,000 Non-Executive Chair $ 30,00

February 29, 2024 EX-1.1

Amendment No. 1 to Sales Agreement, dated as of February 29, 2024, between Rhythm Pharmaceuticals, Inc. and Cowen and Company, LLC.

Exhibit 1.1 RHYTHM PHARMACEUTICALS, Inc. Common Stock AMENDMENT NO. 1 TO SALES AGREEMENT February 29, 2024 Cowen and Company, LLC 599 Lexington Avenue New York, NY 10022 Ladies and Gentlemen: Reference is made to the Sales Agreement, dated November 2, 2021 (the “Agreement”), by and between Rhythm Pharmaceuticals, Inc., a Delaware corporation (the “Company”), and Cowen and Company, LLC (“Cowen”). T

February 22, 2024 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): February 22, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Com

February 22, 2024 EX-99.1

Rhythm Pharmaceuticals Reports Fourth Quarter 2023 Financial Results and Business Update -- Fourth quarter 2023 net revenue from global sales of IMCIVREE® (setmelanotide) of $24.2 million -- -- Enrollment completed in 120-patient, pivotal cohort of P

Exhibit 99.1 Rhythm Pharmaceuticals Reports Fourth Quarter 2023 Financial Results and Business Update - Fourth quarter 2023 net revenue from global sales of IMCIVREE® (setmelanotide) of $24.2 million - - Enrollment completed in 120-patient, pivotal cohort of Phase 3 setmelanotide trial in hypothalamic obesity; top-line data on track for 1H2025 - - Announced Phase 3 development plans for setmelanot

February 14, 2024 EX-99.1

Exhibit 1: Joint Filing Agreement

EX-99.1 2 tm246065d16ex1.htm EXHIBIT 1 EXHIBIT 1 AGREEMENT This Joint Filing Agreement, dated as of February 14, 2024, is by and among RA Capital Management, L.P., Peter Kolchinsky, Rajeev Shah, and RA Capital Healthcare Fund, L.P. (the foregoing are collectively referred to herein as the “Filers”). Each of the Filers may be required to file with the United States Securities and Exchange Commissio

February 14, 2024 SC 13G/A

RYTM / Rhythm Pharmaceuticals, Inc. / RA CAPITAL MANAGEMENT, L.P. - SC 13G/A Passive Investment

SC 13G/A 1 tm246065d1613ga.htm SC 13G/A UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G/A Under the Securities Exchange Act of 1934 (Amendment No. 5)* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock, $0.001 par value per share (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2023 (Date of Event Which Requires Filing of this Statem

February 14, 2024 SC 13G/A

RYTM / Rhythm Pharmaceuticals, Inc. / BAKER BROS. ADVISORS LP - SC 13G/A Passive Investment

SC 13G/A 1 tm242424d24sc13ga.htm SC 13G/A SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 Under the Securities Exchange Act of 1934 (Amendment No. 6)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2023 (Date of Event which Requires Filing of this Statement) Check the a

February 13, 2024 SC 13G

RYTM / Rhythm Pharmaceuticals, Inc. / VANGUARD GROUP INC - SCHEDULE 13G Passive Investment

SC 13G 1 tv01825-rhythmpharmaceutical.htm SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 Schedule 13G Under the Securities Exchange Act of 1934 Name of issuer: Rhythm Pharmaceuticals Inc Title of Class of Securities: Common Stock CUSIP Number: 76243J105 Date of Event Which Requires Filing of this Statement: December 29, 2023 Check the appropriate box to designate the rule p

February 12, 2024 EX-99.1

AGREEMENT

EX-99.1 2 d758102dex991.htm EX-99.1 EXHIBIT 1 AGREEMENT The persons below hereby agree that the Schedule 13G to which this agreement is attached as an exhibit, as well as all future amendments to such Schedule 13G, shall be filed on behalf of each of them. This agreement is intended to satisfy the requirements of Rule 13d-1(k)(1)(iii) under the Securities Exchange Act of 1934. Date: February 12, 2

February 12, 2024 SC 13G/A

RYTM / Rhythm Pharmaceuticals, Inc. / PRIMECAP MANAGEMENT CO/CA/ - PRIMECAP MANAGEMENT CO/CA/ Passive Investment

SC 13G/A 1 rytma621224.htm PRIMECAP MANAGEMENT CO/CA/ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 6)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) COM (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2023 (Date of Event which Requires Filing of this Statement) Check the appropriat

February 12, 2024 SC 13G

RYTM / Rhythm Pharmaceuticals, Inc. / PERCEPTIVE ADVISORS LLC - SC 13G Passive Investment

SC 13G 1 d758102dsc13g.htm SC 13G UNITED STATES SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No.  )* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, $0.001 par value per share (Title of Class of Securities) 76243J105 (CUSIP Number) February 1, 2024 (Date of Event Which Requires Filing of this Statement) Chec

January 4, 2024 8-K

Entry into a Material Definitive Agreement, Unregistered Sales of Equity Securities, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): January 4, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commi

January 4, 2024 8-K

Regulation FD Disclosure

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): January 4, 2024 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commi

December 18, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): December 14, 2023 RHYTHM PHARMACE

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): December 14, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Com

December 18, 2023 EX-3.1

Amended and Restated Bylaws.

Exhibit 3.1 RHYTHM PHARMACEUTICALS, INC. AMENDED AND RESTATED BYLAWS Article I. — General. 1.1.          Offices. The registered office of Rhythm Pharmaceuticals, Inc. (the “Company”) shall be in the City of Wilmington, County of New Castle, State of Delaware. The Company may also have offices at such other places both within and without the State of Delaware as the board of directors of the Compa

December 6, 2023 8-K

Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): December 6, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 8, 2023 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended September 30, 2023 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223

November 7, 2023 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): November 7, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 7, 2023 EX-99.1

Rhythm Pharmaceuticals Reports Third Quarter 2023 Financial Results and Business Update -- Third quarter 2023 net revenue from global sales of IMCIVREE® (setmelanotide) of $22.5 million -- -- More than 100 international patients on reimbursed IMCIVRE

Exhibit 99.1 Rhythm Pharmaceuticals Reports Third Quarter 2023 Financial Results and Business Update - Third quarter 2023 net revenue from global sales of IMCIVREE® (setmelanotide) of $22.5 million - - More than 100 international patients on reimbursed IMCIVREE therapy - - Phase 3 hypothalamic obesity trial on track to be fully enrolled by the end of 2023 - - 25.5% mean BMI reduction achieved at o

September 7, 2023 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc. / FEDERATED HERMES, INC. Passive Investment

OMB APPROVAL OMB Number: 3235-0145 Estimated average burden hours per response ….11 UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 5*) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) 76243J105 (CUSIP Number) August 31, 2023 (Date of Event Which Requires Filing of

August 21, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 21, 2023 RHYTHM PHARMACEUT

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 21, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commi

August 8, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 4, 2023 RHYTHM PHARMACEUTI

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 4, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

August 3, 2023 EX-10.1

Amended & Restated Offer Letter, dated July 28, 2023, by and between the Registrant and Daivd P. Meeker.

Exhibit 10.1 July 28, 2023 David P. Meeker, M.D. Dear David: On behalf of Rhythm Pharmaceuticals, Inc. (the “Company”), I am pleased to set forth below the updated terms of your employment with the Company. You and the Company previously were parties to the employment offer letter, dated July 16, 2020 (the “Prior Letter”). This letter agreement amends and supersedes the Prior Letter in its entiret

August 3, 2023 EX-10.3

Amended & Restated Offer Letter, dated August 3, 2023, by and between the Registrant and Jennifer Chien.

Exhibit 10.3 August 3, 2023 Jennifer Chien Dear Jennifer, On behalf of Rhythm Pharmaceuticals, Inc. (the “Company”), I am pleased to set forth below the updated terms of your employment with the Company. You and the Company previously were parties to the employment offer letter, dated September 25, 2020 (the “Prior Letter”). This letter agreement amends and supersedes the Prior Letter in its entir

August 3, 2023 EX-10.4

Amended & Restated Offer Letter, dated August 3, 2023, by and between the Registrant and Hunter Smith.

Exhibit 10.4 August 3, 2023 Hunter Smith Dear Hunter: On behalf of Rhythm Pharmaceuticals, Inc. (the “Company”), I am pleased to set forth below the updated terms of your employment with the Company. You and the Company previously were parties to the second amended and restated employment offer letter, dated December 21, 2017 (the “Prior Letter”). This letter agreement amends and supersedes the Pr

August 3, 2023 EX-10.2

Amended & Restated Offer Letter, dated July 28, 2023, by and between the Registrant and Joseph Shulman.

Exhibit 10.2 July 28, 2023 Joe Shulman Dear Joe, On behalf of Rhythm Pharmaceuticals, Inc. (the “Company”), I am pleased to set forth below the updated terms of your employment with the Company. You and the Company previously were parties to the employment offer letter, dated June 23, 2020 (the “Prior Letter”). This letter agreement amends and supersedes the Prior Letter in its entirety. Employmen

August 3, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 28, 2023 RHYTHM PHARMACEUTIC

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 28, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

August 1, 2023 EX-99.1

Rhythm Pharmaceuticals Reports Second Quarter 2023 Financial Results and Business -- Second quarter 2023 net revenue of $19.2 million from global sales of IMCIVREE® (setmelanotide) -- -- Strong U.S. commercial progress continues with more than 125 ne

Exhibit 99.1 Rhythm Pharmaceuticals Reports Second Quarter 2023 Financial Results and Business Update - Second quarter 2023 net revenue of $19.2 million from global sales of IMCIVREE® (setmelanotide) - - Strong U.S. commercial progress continues with more than 125 new prescriptions for Bardet- Biedl syndrome (BBS) in 2Q 2023, more than 425 since FDA approval - - Achieved commercial sales milestone

August 1, 2023 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended June 30, 2023 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHYT

August 1, 2023 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 1, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

June 22, 2023 8-K

Submission of Matters to a Vote of Security Holders

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): June 21, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

May 2, 2023 EX-99.1

Rhythm Pharmaceuticals Reports First Quarter 2023 Financial Results and Business Update -- Strong U.S. commercial progress continues for IMCIVREE® (setmelanotide) with more than 300 new prescriptions for Bardet-Biedl syndrome (BBS) received since FDA

Exhibit 99.1 Rhythm Pharmaceuticals Reports First Quarter 2023 Financial Results and Business Update - Strong U.S. commercial progress continues for IMCIVREE® (setmelanotide) with more than 300 new prescriptions for Bardet-Biedl syndrome (BBS) received since FDA approval - - Launched IMCIVREE for BBS in Germany with federal reimbursement - - First patients dosed in pivotal Phase 3 trial evaluating

May 2, 2023 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended March 31, 2023 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHY

May 2, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 2, 2023 RHYTHM PHARMACEUTICAL

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 2, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissio

April 27, 2023 DEF 14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.      )

TABLE OF CONTENTS UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.      ) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☐ Preliminary Proxy Statement ☐ Confidential, for Use of the Commission Only (as permitted by Ru

April 27, 2023 DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amend

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.

March 29, 2023 SC 13D/A

RYTM / Rhythm Pharmaceuticals Inc. / NEW ENTERPRISE ASSOCIATES 13 LP - NEW ENTERPRISE ASSOCIATES 13, LP (RHYTHM PHARMACEUTICALS) - SCHEDULE 13D/A(#1) Activist Investment

Schedule 13D UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13D Under the Securities Exchange Act of 1934 (Amendment No. 1)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) Common Stock, $.001 par value (Title of Class of Securities) 76243J105 (CUSIP Number) Louis S. Citron, Esq. New Enterprise Associates 1954 Greenspring Drive, Suite 600, Timonium, MD 21093 (410) 8

March 10, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 10, 2023 RHYTHM PHARMACEUTI

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 10, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

March 2, 2023 EX-FILING FEES

Filing Fee Table

Exhibit 107.1 CALCULATION OF FILING FEE TABLE FORM S-8 (Form Type) RHYTHM PHARMACEUTICALS, INC. (Exact Name of Registrant as Specified in its Charter) Table I: Newly Registered Securities Plan Security Type Security Class Title Fee Calculation Rule Amount Registered1 Proposed Maximum Offering Price Per Unit Maximum Aggregate Offering Price Fee Rate Amount of Registration Fee 2017 Incentive Award P

March 2, 2023 S-8

As filed with the Securities and Exchange Commission on March 2, 2023

As filed with the Securities and Exchange Commission on March 2, 2023 Registration No.

March 2, 2023 EX-FILING FEES

Filing Fee Table.

Exhibit 107 Calculation of Filing Fee Tables Form S-3 (Form Type) Rhythm Pharmaceuticals, Inc.

March 2, 2023 EX-4.3

Form of Indenture.

Exhibit 4.3 RHYTHM PHARMACEUTICALS, INC. INDENTURE Dated as of , 20 [] Trustee TABLE OF CONTENTS Page ARTICLE I. DEFINITIONS AND INCORPORATION BY REFERENCE 1 Section 1.1. Definitions 1 Section 1.2. Other Definitions 4 Section 1.3. Incorporation by Reference of Trust Indenture Act 5 Section 1.4. Rules of Construction 5 ARTICLE II. THE SECURITIES 5 Section 2.1. Issuable in Series 5 Section 2.2. Esta

March 2, 2023 EX-1.2

Sales Agreement, dated as of November 2, 2021, by and between Rhythm Pharmaceuticals, Inc. and Cowen & Company, LLC.

Exhibit 1.2 RHYTHM PHARMACEUTICALS, INC. $100,000,000 Common Stock SALES AGREEMENT November 2, 2021 Cowen and Company, LLC 599 Lexington Avenue New York, NY 10022 Ladies and Gentlemen: Rhythm Pharmaceuticals, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with Cowen and Company, LLC (“Cowen”), as follows: 1. Issuance and Sale of Shares. The Company agrees t

March 2, 2023 S-3ASR

As filed with the Securities and Exchange Commission on March 2, 2023

TABLE OF CONTENTS As filed with the Securities and Exchange Commission on March 2, 2023 Registration No.

March 1, 2023 10-K

‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-K

Table of Contents ‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

March 1, 2023 EX-4.3

Description of the Registrant’s Securities registered pursuant to Section 12 of the Securities Exchange Act of 1934.

Exhibit 4.3 DESCRIPTION OF THE REGISTRANT’S SECURITIES REGISTERED PURSUANT TO SECTION 12 OF THE SECURITIES EXCHANGE ACT OF 1934 As of December 31, 2022, Rhythm Pharmaceuticals, Inc. (“we,” “our,” “us,” or the “Company”) had one class of securities registered under Section 12 of the Securities Exchange Act of 1934, as amended: common stock, par value $0.001 per share. The following description of o

March 1, 2023 EX-2.2

Share Purchase Agreement, by and between Rhythm Pharmaceuticals Netherlands B.V. and Xinvento B.V., dated February 27, 2023.

Exhibit 2.2 Execution Version SHARE PURCHASE AGREEMENT BY AND AMONG RHYTHM PHARMACEUTICALS NETHERLANDS B.V., THE SELLERS LISTED ON THE SIGNATURE PAGE HERETO, XINVENTO B.V. AND THE SELLER REPRESENTATIVE IDENTIFIED HEREIN DATED AS OF FEBRUARY 24, 2023 CONTENTS Page Section 1. DEFINITIONS AND INTERPRETATIONS 1 1.1 Certain Definitions 1 1.2 Interpretation 14 Section 2. PURCHASE AND SALE 15 2.1 Sale an

March 1, 2023 EX-10.20

Offer Letter, dated June 23, 2020, by and between the Registrant and Joseph Shulman.

Exhibit 10.20 June 23, 2020 Joe Shulman 116 Auburn Street Newton, MA 02466 Dear Joe Congratulations on your offer of employment with Rhythm Pharmaceuticals (also referred to in this letter as the “Company”). I am confident you will find your career with Rhythm to be filled with opportunities, challenges and rewards. We take great pride in hiring professionals who have talent, drive, creativity and

March 1, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 1, 2023 RHYTHM PHARMACEUTIC

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 1, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

March 1, 2023 EX-10.6

Summary of Non-Employee Director Compensation Policy

Exhibit 10.6 Summary of Non-Employee Director Compensation Policy Under the Company’s non-employee director compensation policy, all non-employee directors will be paid an annual retainer fee of $50,000 and such additional fees as are set forth in the following table. All payments will be made quarterly in arrears. Non-Employee Director Annual Fee Lead Director $ 35,000 Non-Executive Chair $ 30,00

March 1, 2023 EX-21.1

List of Subsidiaries.

Exhibit 21.1 Subsidiaries of Rhythm Pharmaceuticals, Inc. Entity Jurisdiction of Organization or Incorporation Rhythm Pharmaceuticals Limited Ireland Rhythm Securities Corp. Massachusetts Rhythm Pharmaceuticals Netherlands, B.V. The Netherlands Rhythm Pharmaceuticals UK Limited Rhythm Pharmaceuticals France SAS Rhythm Pharmaceuticals Italy S.r.L. Rhythm Pharmaceuticals Canada Inc. United Kingdom F

March 1, 2023 EX-99.1

Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2022 Financial Results -- IMCIVREE® U.S. launch for Bardet-Biedl syndrome (BBS) reflects strong demand with more than 200 new prescriptions received since FDA approval -- -- IMCIVREE now ava

Exhibit 99.1 Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2022 Financial Results - IMCIVREE® U.S. launch for Bardet-Biedl syndrome (BBS) reflects strong demand with more than 200 new prescriptions received since FDA approval - - IMCIVREE now available in eight ex-U.S. markets; first commercial sales for BBS expected in Germany in 2Q 2023 - - Pivotal Phase 3 trial evaluating setmelan

February 14, 2023 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / BAKER BROS. ADVISORS LP - SC 13G/A Passive Investment

SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 Under the Securities Exchange Act of 1934 (Amendment No.

February 14, 2023 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / RA CAPITAL MANAGEMENT, L.P. - SC 13G/A Passive Investment

SC 13G/A 1 tm236221d38sc13ga.htm SC 13G/A UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G/A Under the Securities Exchange Act of 1934 (Amendment No. 4)* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock, $0.001 par value per share (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2022 (Date of Event Which Requires Filing of this Stat

February 9, 2023 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / PRIMECAP MANAGEMENT CO/CA/ - PRIMECAP MANAGEMENT CO/CA/ Passive Investment

SC 13G/A 1 rytma520923.htm PRIMECAP MANAGEMENT CO/CA/ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 5)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) COM (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2022 (Date of Event which Requires Filing of this Statement) Check the appropriat

February 1, 2023 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / FEDERATED HERMES, INC. Passive Investment

OMB APPROVAL OMB Number: 3235-0145 Estimated average burden hours per response ….11 UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 4*) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2022 (Date of Event Which Requires Filing

January 9, 2023 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): January 9, 2023 RHYTHM PHARMACEUT

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): January 9, 2023 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commi

January 9, 2023 EX-99.1

© Rhythm® Pharmaceuticals, Inc. All rights reserved. ® January 2023 Rhythm Pharmaceuticals Transforming the lives of patients and their families living with hyperphagia and severe obesity caused by rare MC4R pathway diseases by rapidly advancing care

EX-99.1 2 tm232248d1ex99-1.htm EXHIBIT 99.1 Exhibit 99.1 © Rhythm® Pharmaceuticals, Inc. All rights reserved. ® January 2023 Rhythm Pharmaceuticals Transforming the lives of patients and their families living with hyperphagia and severe obesity caused by rare MC4R pathway diseases by rapidly advancing care and precision medicines addressing the root cause ® 2 This presentation contains certain for

November 8, 2022 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): November 8, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 8, 2022 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

November 8, 2022 EX-99.1

Rhythm Pharmaceuticals Reports Third Quarter 2022 Financial Results and Business Update -- U.S. launch of IMCIVREE® (setmelanotide) for Bardet-Biedl Syndrome progresses with strong demand with more than 120 prescriptions since FDA approval – -- EC au

Exhibit 99.1 Rhythm Pharmaceuticals Reports Third Quarter 2022 Financial Results and Business Update - U.S. launch of IMCIVREE? (setmelanotide) for Bardet-Biedl Syndrome progresses with strong demand with more than 120 prescriptions since FDA approval ? - EC authorization for IMCIVREE expanded to include BBS; UK launch in POMC and LEPR deficiencies underway ? - Setmelanotide received FDA Breakthro

November 3, 2022 8-K

Entry into a Material Definitive Agreement, Termination of a Material Definitive Agreement

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): October 28, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

October 7, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / BAKER BROS. ADVISORS LP - SCHEDULE 13G/A Passive Investment

SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 Under the Securities Exchange Act of 1934 (Amendment No.

September 15, 2022 EX-1.1

Underwriting Agreement, dated as of September 14, 2022, between Rhythm Pharmaceuticals, Inc. and Cowen and Company, LLC, Stifel, Nicolaus & Company, Incorporated and Wells Fargo Securities, LLC, as representatives of the underwriters named therein.

EX-1.1 2 tm2225931d1ex1-1.htm EXHIBIT 1.1 Exhibit 1.1 EXECUTION VERSION 4,800,000 Shares Rhythm Pharmaceuticals, Inc. Common Stock ($0.001 par value) UNDERWRITING AGREEMENT September 14, 2022 September 14, 2022 Cowen and Company, LLC Stifel, Nicolaus & Company, Incorporated Wells Fargo Securities, LLC c/o Cowen and Company, LLC 599 Lexington Avenue New York, New York 10022 c/o Stifel, Nicolaus & C

September 15, 2022 8-K

Financial Statements and Exhibits, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of report (Date of earliest event reported): September 14, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation or o

September 15, 2022 424B5

4,800,000 Shares RHYTHM PHARMACEUTICALS, INC. Common Stock

TABLE OF CONTENTS ?Filed Pursuant to Rule 424(b)(5) ? ?Registration No. 333-260689 ? PROSPECTUS SUPPLEMENT(To Prospectus dated November 15, 2021) ? 4,800,000 Shares RHYTHM PHARMACEUTICALS, INC. Common Stock We are offering 4,800,000 shares of our common stock. Our common stock is listed on The Nasdaq Global Market under the symbol ?RYTM.? On September 14, 2022, the last reported sale price for our

September 14, 2022 424B5

RHYTHM PHARMACEUTICALS, INC. Common Stock

TABLE OF CONTENTS The information in this preliminary prospectus supplement and the accompanying prospectus, relating to an effective registration statement under the Securities Act of 1933, as amended, is not complete and may be changed.

August 3, 2022 EX-10.1

Revenue Interest Financing Agreement, dated June 16, 2022, by and between the Company and entities managed by HealthCare Royalty Management, LLC

[***] Certain information in this document has been omitted pursuant to Regulation S-K, Item (601)(b)(10).

August 3, 2022 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

August 2, 2022 EX-99.1

Rhythm Pharmaceuticals Reports Second Quarter 2022 Financial Results and Business Update -- Received FDA approval for IMCIVREE® (setmelanotide) as the first-ever therapy for patients with Bardet-Biedl syndrome -- -- U.S. launch off to a strong start

Exhibit 99.1 Rhythm Pharmaceuticals Reports Second Quarter 2022 Financial Results and Business Update - Received FDA approval for IMCIVREE® (setmelanotide) as the first-ever therapy for patients with Bardet-Biedl syndrome - - U.S. launch off to a strong start with more than 50 IMCIVREE prescriptions written for patients with BBS in first six weeks since FDA approval - - EMA’s CHMP recommended expa

August 2, 2022 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 2, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

June 16, 2022 8-K

Entry into a Material Definitive Agreement, Creation of a Direct Financial Obligation or an Obligation under an Off-Balance Sheet Arrangement of a Registrant

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): June 16, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

June 10, 2022 8-K

Submission of Matters to a Vote of Security Holders

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): June 8, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissi

May 3, 2022 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 3, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissio

May 3, 2022 EX-99.1

Rhythm Pharmaceuticals Reports First Quarter 2022 Financial Results and Business Update -- Patient identification and physician engagement ongoing in preparation for U.S. commercial launch in June 2022 in BBS and Alström syndrome, pending FDA approva

Exhibit 99.1 Rhythm Pharmaceuticals Reports First Quarter 2022 Financial Results and Business Update - Patient identification and physician engagement ongoing in preparation for U.S. commercial launch in June 2022 in BBS and Alström syndrome, pending FDA approval - - First commercial patients treated with IMCIVREE® (setmelanotide) in France under paid early access program - - First patients enroll

May 3, 2022 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

April 28, 2022 DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amend

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, DC 20549 SCHEDULE 14A (Rule 14a-101) INFORMATION REQUIRED IN PROXY STATEMENT SCHEDULE 14A INFORMATION Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.

April 28, 2022 DEF 14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.      )

DEF 14A 1 tm223476-1def14a.htm DEF 14A TABLE OF CONTENTS UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No.      ) Filed by the Registrant ☒ Filed by a Party other than the Registrant ☐ Check the appropriate box: ☐ Preliminary Proxy Statement ☐ Confidential, for Use of

April 11, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / FEDERATED HERMES, INC. Passive Investment

OMB APPROVAL OMB Number: 3235-0145 Estimated average burden hours per response ….11 UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 3) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) 76243J105 (CUSIP Number) March 31, 2022 (Date of Event Which Requires Filing of t

April 6, 2022 EX-99.1

© Rhythm® Pharmaceuticals, Inc. All rights reserved. ® April 2022 Rhythm Pharmaceuticals Targeting MC4R pathway and transforming the care of patients with rare genetic diseases of obesity

Exhibit 99.1 ? Rhythm? Pharmaceuticals, Inc. All rights reserved. ? April 2022 Rhythm Pharmaceuticals Targeting MC4R pathway and transforming the care of patients with rare genetic diseases of obesity ? 2 This presentation contains certain forward - looking statements within the meaning of the Private Securities Litigation Reform Act of 1995, and that involve risks and uncertainties, including wit

April 6, 2022 8-K

Regulation FD Disclosure, Financial Statements and Exhibits

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): April 6, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

March 1, 2022 EX-10.6

Summary of Non-Employee Director Compensation Policy

Exhibit 10.6 ? Summary of Non-Employee Director Compensation Policy Under the Company?s non-employee director compensation policy, all non-employee directors will be paid an annual retainer fee of $47,500 and such additional fees as are set forth in the following table. All payments will be made quarterly in arrears. Non-Employee Director Annual Fee Lead Director $ 35,000 Non-Executive Chair $ 30,

March 1, 2022 EX-10.10

License Agreement, dated December 3, 2021, by and between the Registrant and RareStone Group Ltd.

Exhibit 10.10 ? [***] Certain information in this document has been excluded pursuant to Regulation S-K, Item (601)(b)(10). Such excluded information is both (i) not material and (ii) the type that the Registrant treats as private or confidential. CONFIDENTIAL Execution Copy EXCLUSIVE LICENSE AGREEMENT THIS EXCLUSIVE LICENSE AGREEMENT (this ?Agreement?) effective as of December 3, 2021 (the ?Effec

March 1, 2022 EX-10.5.1

2022 Employment Inducement Plan and Form of Option Agreement

Exhibits 10.5.1 ? ? ? ? ? RHYTHM PHARMACEUTICALS, INC. 2022 EMPLOYMENT INDUCEMENT PLAN ? ? ? Table Of Contents 1.Purpose2 2.Definitions2 3.Term of the Plan5 4.Stock Subject to the Plan5 5.Administration6 6.Authorization of Grants6 7.Specific Terms of Awards7 8.Adjustment Provisions11 9.Change of Control14 10.Settlement of Awards14 11.Reservation of Stock16 12.Limitation of Rights in Stock; No Spec

March 1, 2022 EX-99.1

Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2021 Financial Results -- Preparations continue for U.S. commercial launch in June 2022 in BBS and Alström syndrome, pending FDA approval -- -- First commercial sales of IMCIVREE in Germany

Exhibit 99.1 Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2021 Financial Results - Preparations continue for U.S. commercial launch in June 2022 in BBS and Alstr?m syndrome, pending FDA approval - - First commercial sales of IMCIVREE in Germany and France expected in 2Q2022 ? - Enrollment completed in Phase 2 trial evaluating setmelanotide in patients with hypothalamic obesity - - I

March 1, 2022 EX-21.1

List of Subsidiaries.

? Exhibit 21.1 ? Subsidiaries of Rhythm Pharmaceuticals, Inc. ? Entity Jurisdiction of Organization or Incorporation Rhythm Pharmaceuticals Limited ? Ireland Rhythm Securities Corp. Massachusetts Rhythm Pharmaceuticals Netherlands, B.V. ? The Netherlands Rhythm Pharmaceuticals UK Limited Rhythm Pharmaceuticals France SAS Rhythm Pharmaceuticals Italy S.r.L. Rhythm Pharmaceuticals Canada Inc. ? Unit

March 1, 2022 S-8

As filed with the Securities and Exchange Commission on March 1, 2022

As filed with the Securities and Exchange Commission on March 1, 2022 Registration No.

March 1, 2022 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 1, 2022 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

March 1, 2022 EX-10.5.2

2022 Employment Inducement Plan Form of Restricted Stock Unit Agreement

Exhibit 10.5.2 RHYTHM PHARMACEUTICALS, INC. 2022 EMPLOYMENT INDUCEMENT PLAN Restricted Stock Unit Agreement This Restricted Stock Unit Agreement (this ?Agreement?), dated as of , 20 (the ?Date of Grant?), is between Rhythm Pharmaceuticals, Inc., a corporation organized under the laws of the State of Delaware (the ?Company?) and (the ?Participant?). Capitalized terms used in this Agreement without

March 1, 2022 EX-FILING FEES

Filing Fee Table

EX-FILING FEES 4 tm227881d1ex-filingfees.htm EX-FILING FEES Exhibit 107.1 CALCULATION OF FILING FEE TABLE FORM S-8 (Form Type) RHYTHM PHARMACEUTICALS, INC. (Exact Name of Registrant as Specified in its Charter) Table I: Newly Registered Securities Plan Security Type Security Class Title Fee Calculation Rule Amount Registered(1) Proposed Maximum Offering Price Per Unit Maximum Aggregate Offering Pr

March 1, 2022 S-8

As filed with the Securities and Exchange Commission on March 1, 2022

As filed with the Securities and Exchange Commission on March 1, 2022 Registration No.

March 1, 2022 EX-FILING FEES

Filing Fee Table

Exhibit 107.1 CALCULATION OF FILING FEE TABLE FORM S-8 (Form Type) RHYTHM PHARMACEUTICALS, INC. (Exact Name of Registrant as Specified in its Charter) Table I: Newly Registered Securities Plan Security Type Security Class Title Fee Calculation Rule Amount Registered(1) Proposed Maximum Offering Price Per Unit Maximum Aggregate Offering Price Fee Rate Amount of Registration Fee 2017 Incentive Award

March 1, 2022 EX-10.21.2

Consulting Agreement, dated September 11, 2021, by and between the Registrant and Murray Stewart, D.M., F.R.C.P.

? Exhibit 10.21.2 CONSULTING AGREEMENT This Consulting Agreement (this ?Agreement?) is entered effective as of this 11th day of September, 2021 (the ?Effective Date?) between Rhythm Pharmaceuticals, Inc., a Delaware corporation located at 222 Berkeley Street, Suite 1200, Boston, MA 02116 (the ?Company?), and Murray Stewart, D.M., F.R.C.P. (the ?Consultant?), residing or having a principal place of

March 1, 2022 10-K

‘ UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-K

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

February 14, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / RA CAPITAL MANAGEMENT, L.P. - RHYTHM PHARMACEUTICALS, INC. Passive Investment

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G/A Under the Securities Exchange Act of 1934 (Amendment No. 3)* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2021 (Date of Event Which Requires Filing of this Statement) Check the appropriate box to design

February 14, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / FEDERATED HERMES, INC. Passive Investment

OMB APPROVAL OMB Number: 3235-0145 Estimated average burden hours per response ?.11 UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 2) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2021 (Date of Event Which Requires Filing o

February 14, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / BAKER BROS. ADVISORS LP - SC 13G/A Passive Investment

SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 Under the Securities Exchange Act of 1934 (Amendment No.

February 11, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / Flynn James E Passive Investment

SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 SCHEDULE 13G (Rule 13d-102) INFORMATION TO BE INCLUDED IN STATEMENTS FILED PURSUANT TO RULES 13d-1(b)(c), AND (d) AND AMENDMENTS THERETO FILED PURSUANT TO RULE 13d-2(b) (Amendment No.

February 10, 2022 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / PRIMECAP MANAGEMENT CO/CA/ - PRIMECAP MANAGEMENT CO/CA/ Passive Investment

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 4)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) COM (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2021 (Date of Event which Requires Filing of this Statement) Check the appropriate box to designate the rule pursuant to which this Sch

December 10, 2021 SC 13G/A

RYTM / Rhythm Pharmaceuticals Inc / FEDERATED HERMES, INC. Passive Investment

OMB APPROVAL OMB Number: 3235-0145 Estimated average burden hours per response ?.11 UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 1) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) 76243J105 (CUSIP Number) November 30, 2021 (Date of Event Which Requires Filing o

December 8, 2021 8-K

Entry into a Material Definitive Agreement

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): December 3, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 10, 2021 CORRESP

November 10, 2021

November 10, 2021 Via EDGAR Transmission United States Securities and Exchange Commission Division of Corporation Finance Office of Life Sciences 100 F Street, N.

November 2, 2021 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

November 2, 2021 EX-10.2

Offer Letter, dated September 1, 2021, by and between the Registrant and Linda Shapiro Manning, M.D.

Exhibit 10.2 September 1, 2021 RE: Chief Medical Officer Appointment Dear Linda, Congratulations on your promotion to Chief Medical Officer with Rhythm Pharmaceuticals, Inc. (referred to in this letter as ?Rhythm? or the ?Company?) effective September 10, 2021, reporting to David Meeker, President & Chief Executive Officer. Below you will find important information about your position, rewards and

November 2, 2021 EX-4.1

Amendment No. 1 to Amended and Restated Investors' Rights Agreement, dated January 25, 2021.

Exhibit 4.1 ? RHYTHM PHARMACEUTICALS, INC. ? AMENDMENT NO. 1 TO AMENDED AND RESTATED INVESTORS? RIGHTS AGREEMENT ? This Amendment No. 1 to Amended and Restated Investors? Rights Agreement (this ?Amendment?) is entered into as of January 25, 2021, by and among Rhythm Pharmaceuticals, Inc., a Delaware corporation (the ?Company?), and the undersigned Investors (the ?Amending Investors?) party to that

November 2, 2021 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): November 2, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 2, 2021 EX-99.1

Rhythm Pharmaceuticals Reports Third Quarter 2021 Financial Results -- U.S. and EU regulatory filings submitted for IMCIVREE® (setmelanotide) for treatment of Bardet-Biedl and Alström syndromes; launch preparations underway -- -- Delivered a total of

Exhibit 99.1 Rhythm Pharmaceuticals Reports Third Quarter 2021 Financial Results - U.S. and EU regulatory filings submitted for IMCIVREE? (setmelanotide) for treatment of Bardet-Biedl and Alstr?m syndromes; launch preparations underway - - Delivered a total of 22 presentations at three major medical conferences - - New presentations include first-ever data showing improvements in health-related qu

November 2, 2021 EX-1.2

Sales Agreement, dated as of November 2, 2021, by and between Rhythm Pharmaceuticals, Inc. and Cowen & Company, LLC.

EX-1.2 2 tm2131565d2ex1-2.htm EXHIBIT 1.2 Exhibit 1.2 RHYTHM PHARMACEUTICALS, INC. $100,000,000 Common Stock SALES AGREEMENT November 2, 2021 Cowen and Company, LLC 599 Lexington Avenue New York, NY 10022 Ladies and Gentlemen: Rhythm Pharmaceuticals, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with Cowen and Company, LLC (“Cowen”), as follows: 1. Issuanc

November 2, 2021 EX-4.3

Form of Indenture to be entered into between the Registrant and a trustee acceptable to the registrant.

Exhibit 4.3 RHYTHM PHARMACEUTICALS, INC. INDENTURE Dated as of , 20 [] Trustee TABLE OF CONTENTS Page ARTICLE I. DEFINITIONS AND INCORPORATION BY REFERENCE 1 Section 1.1. Definitions 1 Section 1.2. Other Definitions 4 Section 1.3. Incorporation by Reference of Trust Indenture Act 4 Section 1.4. Rules of Construction 4 ARTICLE II. THE SECURITIES 5 Section 2.1. Issuable in Series 5 Section 2.2. Esta

November 2, 2021 S-3

As filed with the Securities and Exchange Commission on November 2, 2021

TABLE OF CONTENTS As filed with the Securities and Exchange Commission on November 2, 2021 Registration No.

September 2, 2021 8-K

Regulation FD Disclosure

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 31, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commi

August 3, 2021 EX-10.1

Offer Letter, dated July 9, 2021, by and between the Registrant and Pamela Cramer

Exhibit 10.1 July 9, 2021 Pamela Cramer 12 Charles Street Newburyport, MA 01950 Dear Pam, Congratulations on your offer of employment with Rhythm Pharmaceuticals, Inc. (referred to in this letter as ?Rhythm? or the ?Company?). I am confident you will find your career with Rhythm to be filled with opportunities, challenges and rewards. We take great pride in hiring professionals who have talent, dr

August 3, 2021 EX-99.1

Rhythm Pharmaceuticals Reports Second Quarter 2021 Financial Results -- Received European Commission authorization of IMCIVREE for treatment of obesity and control of hunger associated with POMC, PCSK1 and LEPR deficiencies – -- Setmelanotide selecte

Exhibit 99.1 Rhythm Pharmaceuticals Reports Second Quarter 2021 Financial Results - Received European Commission authorization of IMCIVREE for treatment of obesity and control of hunger associated with POMC, PCSK1 and LEPR deficiencies ? - Setmelanotide selected for evaluation as a ?Highly Specialised Technology? by Great Britain?s National Institute for Health and Care Excellence ? - On track to

August 3, 2021 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 3, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

August 3, 2021 10-Q

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

June 14, 2021 8-K

Submission of Matters to a Vote of Security Holders

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): June 9, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissi

May 3, 2021 EX-99.1

Rhythm Pharmaceuticals Reports First Quarter 2021 Financial Results -- First U.S. commercial sales of IMCIVREE™ (setmelanotide) completed late in first quarter – -- Late-breaking data presentations at ENDO 2021 demonstrated continued weight loss with

Exhibit 99.1 Rhythm Pharmaceuticals Reports First Quarter 2021 Financial Results - First U.S. commercial sales of IMCIVREE? (setmelanotide) completed late in first quarter ? - Late-breaking data presentations at ENDO 2021 demonstrated continued weight loss with setmelanotide at up to nine months in HET obesity, as well as weight loss data in adults and BMI-Z reductions in adolescents with Bardet-B

May 3, 2021 10-Q

Quarterly Report - 10-Q

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

May 3, 2021 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): May 3, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commissio

April 27, 2021 DEF 14A

Proxy Statement on Schedule 14A, filed with the SEC on April 27, 2021

TABLE OF CONTENTS UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No. ??) Filed by the Registrant ? Filed by a Party other than the Registrant ? Check the appropriate box: ? Preliminary Proxy Statement ? ? Confidential, for Use of the Commission Only (as permitted by Rul

April 27, 2021 DEFA14A

- DEFA14A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 14A Proxy Statement Pursuant to Section 14(a) of the Securities Exchange Act of 1934 (Amendment No. ) Filed by the Registrant x Filed by a Party other than the Registrant ? Check the appropriate box: ? Preliminary Proxy Statement ? Confidential, for Use of the Commission Only (as permitted by Rule 14a-6(e)(2)) ? Defin

April 23, 2021 8-K

Departure of Directors or Certain Officers; Election of Directors; Appointment of Certain Officers; Compensatory Arrangements of Certain Officers

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): April 23, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

March 16, 2021 8-K

Departure of Directors or Certain Officers; Election of Directors; Appointment of Certain Officers; Compensatory Arrangements of Certain Officers

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 11, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

March 8, 2021 SC 13G/A

SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 3)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) (Title of Class of Securities)

UNITED STATES OMB APPROVAL SECURITIES AND EXCHANGE COMMISSION OMB Number: 3235-0145 Washington, D.

March 1, 2021 EX-10.15

Offer Letter, dated September 14, 2018, by and between the Registrant and Murray Stewart M.D.

? Exhibit 10.15 rhythm Rhythm Pharmaceuticals, Inc. 500 Boylston Street - 11th Floor Boston, MA 02116 Main Telephone: 617-585-2090 www.rhythmtx.com Sept 14, 2018 Dr. Murray Stewart Dear Murray: On behalf of Rhythm Pharmaceuticals, Inc., (the "Company" or "Rhythm"), I am pleased to set forth below the terms of your employment with the Company. Employment. You will be employed as Chief Medical Offic

March 1, 2021 EX-10.5

Summary of Non-Employee Director Compensation Policy

Exhibit 10.5 Summary of Non-Employee Director Compensation Policy Under the Company?s non-employee director compensation policy, all non-employee directors will be paid an annual retainer fee of $45,000 and such additional fees as are set forth in the following table. All payments will be made quarterly in arrears. Non-Employee Director Annual Fee Lead Director $ 25,000 Non-Executive Chair $ 30,00

March 1, 2021 EX-21.1

List of Subsidiaries.

? Exhibit 21.1 ? Subsidiaries of Rhythm Pharmaceuticals, Inc. ? Entity Jurisdiction of Organization or Incorporation Rhythm Pharmaceuticals Limited ? Ireland Rhythm Securities Corp. Massachusetts

March 1, 2021 10-K

Annual Report - 10-K

Table of Contents ? ? UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.

March 1, 2021 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): March 1, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

March 1, 2021 EX-99.1

Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2020 Financial Results -- Received FDA approval of IMCIVREE™ (setmelanotide), the first-ever therapy for chronic weight management in patients with obesity due to POMC, PCSK1 or LEPR deficie

EX-99.1 2 tm218240d1ex99-1.htm EXHIBIT 99.1 Exhibit 99.1 Rhythm Pharmaceuticals Reports Fourth Quarter and Full Year 2020 Financial Results - Received FDA approval of IMCIVREE™ (setmelanotide), the first-ever therapy for chronic weight management in patients with obesity due to POMC, PCSK1 or LEPR deficiency - - Announced positive topline data from Phase 3 pivotal trial evaluating setmelanotide in

March 1, 2021 S-8

- FORM S-8

As filed with the Securities and Exchange Commission on March 1, 2021 Registration No.

March 1, 2021 EX-10.14

Offer Letter, dated May 10, 2018, by and between the Registrant and Simon D. Kelner.

? Exhibit 10.14 rhythm Rhythm Pharmaceuticals, Inc. 500 Boylston Street - 11th Floo!" Boston, MA 02116 Main Telephone: 617-585-2090 www.rhythmtx.com May 10, 2018 Simon Kelner Dear Simon: On behalf of Rhythm Pharmaceuticals, Inc., (the "Company" or "Rhythm"), I am pleased to set forth below the terms of your employment with the Company. Employment. You will be employed as Chief Human Resources Offi

March 1, 2021 EX-10.16

Offer Letter, dated September 25, 2020, by and between the Registrant and Jennifer Chien.

Exhibit 10.16 ? September 25, 2020 Jennifer Chien Dear Jennifer, Congratulations on your offer of employment with Rhythm Pharmaceuticals (also referred to in this letter as the "Company"). I run confident you will find your career with Rhythm to be filled with opportunities, challenges and rewards. We take great pride in hiring professionals who have talent, drive, creativity and commitment and we

February 16, 2021 SC 13G/A

SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 Under the Securities Exchange Act of 1934 (Amendment No. 2)*

SCHEDULE 13G SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 Under the Securities Exchange Act of 1934 (Amendment No.

February 16, 2021 SC 13G/A

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 2)* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class o

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 2)* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock, par value $0.001 per share (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2020 (Date of Event Which Requires Filing of this Statement) Check the appropriate box to designat

February 12, 2021 SC 13G

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. _____*) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) (CUSIP Num

SC 13G 1 rhythm.htm OMB APPROVAL OMB Number: 3235-0145 Estimated average burden hours per response ….11 UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. *) RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) COMMON STOCK (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2020 (Date of Event Whi

February 12, 2021 SC 13G/A

SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 2)* Rhythm Pharmaceuticals, Inc. (Name of Issuer) (Title of Class of Securities) (CUSIP Number) December 31, 2020 (Date of Event Which Requires Filing of this Statement)

UNITED STATES OMB APPROVAL SECURITIES AND EXCHANGE COMMISSION OMB Number: 3235-0145 Washington, D.

February 12, 2021 SC 13G/A

SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 SCHEDULE 13G (Rule 13d-102) INFORMATION TO BE INCLUDED IN STATEMENTS FILED PURSUANT TO RULES 13d-1(b)(c), AND (d) AND AMENDMENTS THERETO FILED PURSUANT TO RULE 13d-2(b) (Amendment No. 2) * Rhyth

SECURITIES AND EXCHANGE COMMISSION WASHINGTON, DC 20549 SCHEDULE 13G (Rule 13d-102) INFORMATION TO BE INCLUDED IN STATEMENTS FILED PURSUANT TO RULES 13d-1(b)(c), AND (d) AND AMENDMENTS THERETO FILED PURSUANT TO RULE 13d-2(b) (Amendment No.

February 5, 2021 8-K

Financial Statements and Exhibits, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of report (Date of earliest event reported): February 4, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation or org

February 5, 2021 424B5

5,000,000 Shares RHYTHM PHARMACEUTICALS, INC. Common Stock

TABLE OF CONTENTS  Filed Pursuant to Rule 424(b)(5)  Registration No. 333-228323 PROSPECTUS SUPPLEMENT (To Prospectus dated November 9, 2018) 5,000,000 Shares RHYTHM PHARMACEUTICALS, INC. Common Stock We are offering 5,000,000 shares of our common stock. Our common stock is listed on The Nasdaq Global Market under the symbol “RYTM.” On February 3, 2021, the last reported sale price for our common

February 5, 2021 EX-1.1

Underwriting Agreement, dated as of February 4, 2021, between Rhythm Pharmaceuticals, Inc. and Morgan Stanley & Co. LLC, BofA Securities, Inc., Cowen and Company, LLC and Stifel, Nicolaus & Company, Incorporated, as representatives of the underwriters named therein.

EX-1.1 2 tm213890d5ex1-1.htm EXHIBIT 1.1 Exhibit 1.1 EXECUTION VERSION 5,000,000 Shares Rhythm Pharmaceuticals, Inc. Common Stock ($0.001 par value) UNDERWRITING AGREEMENT February 4, 2021 February 4, 2021 Morgan Stanley & Co. LLC BofA Securities, Inc. Cowen and Company, LLC Stifel, Nicolaus & Company, Incorporated c/o Morgan Stanley & Co. LLC 1585 Broadway New York, New York 10036 c/o BofA Securi

February 4, 2021 SC 13G/A

SCHEDULE 13G

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 SCHEDULE 13G Under the Securities Exchange Act of 1934 (Amendment No. 1 )* RHYTHM PHARMACEUTICALS, INC. (Name of Issuer) Common Stock (Title of Class of Securities) 76243J105 (CUSIP Number) December 31, 2020 (Date of Event Which Requires Filing of this Statement) Check the appropriate box to designate the rule pursuant to whic

February 3, 2021 8-K

Results of Operations and Financial Condition, Other Events

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of report (Date of earliest event reported): February 3, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation or org

February 3, 2021 8-K

Regulation FD Disclosure, Financial Statements and Exhibits - FORM 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): February 2, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

February 3, 2021 EX-99.1

© Rhythm® Pharmaceuticals, Inc. All rights reserved. ® February 2021 Rhythm Pharmaceuticals Targeting MC4R pathway and transforming the care of patients with rare genetic diseases of obesity

Exhibit 99.1 © Rhythm® Pharmaceuticals, Inc. All rights reserved. ® February 2021 Rhythm Pharmaceuticals Targeting MC4R pathway and transforming the care of patients with rare genetic diseases of obesity ® 2 This presentation contains certain statements that are forward - looking within the meaning of Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange

February 3, 2021 424B5

Subject to completion, dated February 3, 2021

TABLE OF CONTENTS The information in this preliminary prospectus supplement and the accompanying prospectus, relating to an effective registration statement under the Securities Act of 1933, as amended, is not complete and may be changed.

January 5, 2021 8-K

Entry into a Material Definitive Agreement, Financial Statements and Exhibits - FORM 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): January 5, 2021 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commi

January 5, 2021 EX-2.1

Asset Purchase Agreement, dated January 5, 2021, between the Registrant and Alexion Pharmaceuticals, Inc.

EX-2.1 2 tm211725d1ex2-1.htm EXHIBIT 2.1 Exhibit 2.1 Execution Version ASSET PURCHASE AGREEMENT BY AND BETWEEN Alexion Pharmaceuticals, Inc. AND Rhythm Pharmaceuticals, Inc. January 5, 2021 ASSET PURCHASE AGREEMENT This ASSET PURCHASE AGREEMENT (this “Agreement”) is made and entered into as of January 5, 2021 (the “Effective Date”), by and between Alexion Pharmaceuticals, Inc., a corporation organ

January 4, 2021 8-K/A

Departure of Directors or Certain Officers; Election of Directors; Appointment of Certain Officers; Compensatory Arrangements of Certain Officers

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K/A (Amendment No. 1) CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): December 31, 2020 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of

December 11, 2020 EX-3.1

Amended and Restated Bylaws.

Exhibit 3.1 RHYTHM PHARMACEUTICALS, INC. AMENDED AND RESTATED BYLAWS Article I. — General. 1.1. Offices. The registered office of Rhythm Pharmaceuticals, Inc. (the “Company”) shall be in the City of Wilmington, County of New Castle, State of Delaware. The Company may also have offices at such other places both within and without the State of Delaware as the board of directors of the Company (the “

December 11, 2020 8-K

Departure of Directors or Certain Officers; Election of Directors; Appointment of Certain Officers; Compensatory Arrangements of Certain Officers, Amendments to Articles of Incorporation or Bylaws; Change in Fiscal Year, Financial Statements and Exhibits

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): December 9, 2020 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 2, 2020 10-Q

Quarterly Report - 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended September 30, 2020 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223

November 2, 2020 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition - FORM 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): November 2, 2020 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Comm

November 2, 2020 EX-10.1

Offer Letter, dated September 4, 2020, by and between the Registrant and Yann Mazabraud.

EXHIBIT 10.01 CONTRAT DE TRAVAIL A DUREE INDETERMINEE ENTRE : Rhythm Pharmaceuticals, Inc. société de droit étranger non établie en France, dont le siège social est situé 222 Berkeley Street, Suite 1200, Boston, MA 02116 (Etats Unis) dûment représentée par David Meeker, MD en qualité de Président & CEO, ci-après désignée la « Société », « l’Employeur » ou « Rhythm », D'UNE PART, ET : Monsieur Yann

November 2, 2020 EX-99.1

Rhythm Pharmaceuticals Reports Third Quarter 2020 Financial Results -- NDA for setmelanotide for POMC and LEPR deficiency obesities under review, with PDUFA goal date of November 27, 2020 -- -- Appointed Jennifer Chien and Yann Mazabraud to co-lead g

Exhibit 99.1 Rhythm Pharmaceuticals Reports Third Quarter 2020 Financial Results - NDA for setmelanotide for POMC and LEPR deficiency obesities under review, with PDUFA goal date of November 27, 2020 - - Appointed Jennifer Chien and Yann Mazabraud to co-lead global integrated commercial strategies – - On track to announce topline data from pivotal Phase 3 trial in Bardet-Biedl and Alström syndrome

November 2, 2020 EX-10.2

Separation Agreement, dated September 30, 2020, between Rhythm Pharmaceuticals, Inc. and Nithya Desikan.

Exhibit 10.2 Separation Agreement and Release This Separation Agreement and Release (“Agreement”) is made by and between Nithya Desikan (“Executive”) and Rhythm Pharmaceuticals, Inc. (the “Company”) (collectively referred to as the “Parties” or individually referred to as a “Party”). WHEREAS, the Parties have previously entered into an employment offer letter agreement, dated as of September 13, 2

September 16, 2020 8-K

Departure of Directors or Certain Officers; Election of Directors; Appointment of Certain Officers; Compensatory Arrangements of Certain Officers, Other Events - FORM 8-K

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): September 14, 2020 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Co

August 3, 2020 8-K

Financial Statements and Exhibits, Results of Operations and Financial Condition

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): August 3, 2020 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commis

August 3, 2020 EX-99.1

Rhythm Pharmaceuticals Reports Second Quarter 2020 Financial Results -- Appointed David Meeker, M.D., as President and Chief Executive Officer – -- FDA granted rare pediatric disease designations for setmelanotide for the treatment of POMC and LEPR d

Exhibit 99.1 Rhythm Pharmaceuticals Reports Second Quarter 2020 Financial Results - Appointed David Meeker, M.D., as President and Chief Executive Officer – - FDA granted rare pediatric disease designations for setmelanotide for the treatment of POMC and LEPR deficiency obesities - - Submitted MAA to EMA for setmelanotide in POMC and LEPR deficiency obesities - - Received FDA acceptance of NDA for

August 3, 2020 EX-10.1

Second Amendment to Development and Manufacturing Services Agreement, dated July 15, 2020, by and between the Registrant and Corden Pharma Brussels S.A.

Exhibit 10.1 Certain information marked as [***] has been excluded from this exhibit because it is both (i) not material and (ii) would be competitively harmful if publicly disclosed. AMENDMENT NO. 2 TO DEVELOPMENT AND MANUFACTURING SERVICES AGREEMENT Amendment No. 2 to Development and Manufacturing and Services Agreement effective as of July 15, 2020 (the “Amendment No. 2”), between RHYTHM PHARMA

August 3, 2020 10-Q

Quarterly Report - 10-Q

Table of Contents UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q ☒ QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended June 30, 2020 OR ☐ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from to Commission file number 001-38223 RHYT

July 21, 2020 8-K

Departure of Directors or Certain Officers; Election of Directors; Appointment of Certain Officers; Compensatory Arrangements of Certain Officers, Entry into a Material Definitive Agreement, Financial Statements and Exhibits

UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 8-K CURRENT REPORT Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 Date of Report (Date of earliest event reported): July 15, 2020 RHYTHM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) Delaware 001-38223 46-2159271 (State or other jurisdiction of incorporation) (Commiss

July 21, 2020 EX-10.1

Offer Letter, dated July 16, 2020, between Rhythm Pharmaceuticals, Inc. and David P. Meeker, M.D.

Exhibit 10.1 July 16, 2020 David P. Meeker, M.D. Dear David: On behalf of Rhythm Pharmaceuticals, Inc., (the “Company” or “Rhythm”), I am pleased to offer you employment with the Company on the following terms. Employment. I am pleased to offer you the position of President & CEO, beginning July 20, 2020 (the “Start Date”), reporting to the Board of Directors. You will be responsible for performin

June 26, 2020 EX-99.A

Joint Filing Statement

EX-99.A Exhibit A Joint Filing Statement I, the undersigned, hereby express my agreement that the attached Schedule 13D (and any amendments thereto) relating to the beneficial ownership by the undersigned of the equity securities of Rhythm Pharmaceuticals, Inc. is filed on behalf of each of the undersigned. Date: June 26, 2020 MPM BIOVENTURES V GP LLC By: MPM BioVentures V LLC, its Managing Member

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